##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index16_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18866789	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.181604352494745	33.0	31.0	34.0	31.0	34.0
2	32.411273693684706	34.0	31.0	34.0	31.0	34.0
3	32.42609677778238	34.0	31.0	34.0	31.0	34.0
4	36.07658764827443	37.0	35.0	37.0	35.0	37.0
5	35.96854610501024	37.0	35.0	37.0	35.0	37.0
6	35.948105848854304	37.0	35.0	37.0	35.0	37.0
7	35.93742697816783	37.0	35.0	37.0	35.0	37.0
8	35.90049112225721	37.0	35.0	37.0	35.0	37.0
9	37.59731690432325	39.0	37.0	39.0	35.0	39.0
10-14	37.83386869911992	39.2	37.2	39.4	35.0	39.4
15-19	38.77871871042815	40.0	38.0	41.0	34.8	41.0
20-24	38.59079649430542	40.0	38.0	41.0	34.0	41.0
25-29	38.24679132204214	40.0	38.0	41.0	33.6	41.0
30-34	38.20384204222563	40.0	38.0	41.0	33.4	41.0
35-39	37.90716811429862	40.0	37.0	41.0	33.0	41.0
40-44	37.804565599371465	40.0	37.0	41.0	33.0	41.0
45-49	37.4395709518986	39.4	35.8	41.0	31.8	41.0
50-54	36.82931319155581	38.8	35.0	40.4	31.0	41.0
55-59	36.13948839943034	37.8	34.6	40.0	29.8	41.0
60-64	35.31531685651437	36.6	34.0	39.6	28.6	41.0
65-69	34.38638724374349	35.4	33.2	38.8	27.8	40.4
70-74	33.30576174885933	35.0	32.2	37.2	26.0	39.6
75-79	32.25612164316885	34.4	31.2	36.0	25.2	38.6
80-84	31.62411720404569	34.2	31.0	35.0	24.4	36.8
85-89	30.361937561288254	34.0	30.8	35.0	16.6	36.0
90	29.289267240970364	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	15.0
12	98.0
13	788.0
14	3957.0
15	10457.0
16	18667.0
17	26642.0
18	33627.0
19	41362.0
20	50116.0
21	59922.0
22	69650.0
23	82112.0
24	100006.0
25	124107.0
26	158052.0
27	204578.0
28	261078.0
29	331371.0
30	418117.0
31	523239.0
32	660202.0
33	853160.0
34	1160655.0
35	1670976.0
36	2546249.0
37	3632592.0
38	3923987.0
39	1877465.0
40	23542.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	26.046468262530944	12.802022680664601	10.121378255174042	51.03013080163041
2	22.075155067217228	19.269634931480876	35.61238458950175	23.04282541180014
3	25.52875849727264	21.593526063179063	22.880151996187585	29.997563443360715
4	27.727850245211304	27.88451177357207	19.468659982363718	24.918977998852903
5	29.30521923553911	29.88812720937207	21.428016409366172	19.378637145722646
6	24.13024813072325	32.85027462807794	21.866370583780846	21.153106657417965
7	21.500378257264657	18.78369975940262	37.52261182334736	22.19331015998536
8	21.563409650683006	22.035016133375954	29.273343757647368	27.12823045829367
9	21.66556269855989	20.96789761098192	31.6355104199236	25.731029270534588
10-14	24.690446265127576	26.22902180121906	24.621046008411923	24.459485925241438
15-19	25.09756482674397	25.09455424555816	25.025344800326117	24.782536127371753
20-24	24.859156209119302	25.34970604747971	25.352912740570087	24.4382250028309
25-29	24.750711422813506	25.3690487128156	25.28618176116532	24.594058103205573
30-34	24.817963235038917	25.269831702852883	25.22217677296979	24.690028289138404
35-39	24.80858367438947	25.41465692458025	25.183779348086226	24.592980052944057
40-44	24.76800357142486	25.242195623159976	25.34183097306592	24.647969832349244
45-49	24.707263525690223	25.306358632738128	25.273067561665446	24.713310279906203
50-54	24.753380039777678	25.380847226691998	25.292916283514476	24.57285645001585
55-59	24.796213690979833	25.288696299363174	25.246626646732462	24.66846336292453
60-64	24.70740113779636	25.308442578581058	25.352459615590266	24.631696668032312
65-69	24.71553672216666	25.42954847792173	25.333701684551702	24.5212131153599
70-74	24.781990424057174	25.362227332192333	25.236863822114124	24.61891842163637
75-79	24.75527951300859	25.319415292869568	25.31803610960451	24.607269084517334
80-84	24.67727479200092	25.451567234705436	25.335732272838822	24.535425700454823
85-89	24.769722107799208	25.43925098351908	25.225217107555288	24.565809801126427
90	24.493195414400795	25.54422532756665	25.448828937491562	24.513750320540986
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.07659906416136
2	45.11798047901737
3	55.52632194063335
4	52.64682824406422
5	48.68385638126176
6	45.28335478814122
7	43.693688417250016
8	48.69164010897668
9	47.39659196909447
10-14	49.149932190369015
15-19	49.88010095411572
20-24	49.2973812119502
25-29	49.34476952601908
30-34	49.50799152417733
35-39	49.401563727333524
40-44	49.4159734037741
45-49	49.420573805596426
50-54	49.32623648979352
55-59	49.46467705390437
60-64	49.33909780582867
65-69	49.23674983752656
70-74	49.40090884569354
75-79	49.36254859752592
80-84	49.21270049245574
85-89	49.33553190892563
90	49.00694573494178
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	1.0
2	0.5
3	2.5
4	5.0
5	6.0
6	6.5
7	11.5
8	18.0
9	31.5
10	43.0
11	65.5
12	115.5
13	197.0
14	331.0
15	567.0
16	1009.5
17	1795.5
18	3111.5
19	5554.0
20	7180.0
21	9813.5
22	16570.0
23	26465.0
24	39985.5
25	58424.0
26	81892.5
27	110718.0
28	141715.5
29	174650.5
30	192635.0
31	209666.5
32	245298.5
33	286518.5
34	331216.0
35	373331.5
36	417938.5
37	468069.0
38	509874.5
39	544778.5
40	563438.0
41	575340.5
42	598659.0
43	620935.0
44	636784.0
45	644810.0
46	645675.0
47	641952.5
48	641699.0
49	643933.5
50	644871.0
51	637769.5
52	629336.0
53	618807.5
54	613983.0
55	614626.0
56	604097.5
57	589006.5
58	570754.5
59	547374.5
60	533955.0
61	518612.5
62	488358.0
63	451070.5
64	405696.0
65	361265.0
66	316648.5
67	269630.5
68	226081.5
69	184829.5
70	163293.0
71	145609.0
72	112764.0
73	85253.5
74	61588.5
75	41765.5
76	27315.5
77	16856.0
78	9410.0
79	4725.0
80	2969.0
81	2184.0
82	1003.5
83	441.5
84	193.5
85	79.0
86	39.0
87	27.0
88	17.0
89	10.5
90	9.0
91	7.0
92	3.5
93	2.5
94	1.5
95	0.5
96	0.5
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.17370735422969963
2	0.05111627633085842
3	0.0
4	0.0
5	1.5900956967293163E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	3.180191393458633E-6
25-29	8.501711658512745E-4
30-34	0.0017247237990523985
35-39	0.0036391990179144955
40-44	0.0031452092881305875
45-49	0.002485849605886831
50-54	0.01293277833339844
55-59	0.0024264860332089367
60-64	1.802108456293225E-5
65-69	6.784408306045083E-5
70-74	0.005364982880764713
75-79	0.0029194156991950247
80-84	6.307379597026288E-4
85-89	7.918676569711996E-4
90	0.001309178790307137
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8866789E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.499167150695314
#Duplication Level	Relative count
1	100.0
2	31.233289632604183
3	16.240154432183008
4	9.840922463895284
5	6.800796936131556
6	4.930268088488815
7	3.8143510441721467
8	2.9988335002219446
9	2.386679191915021
10++	28.214842419299895
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	4794865	2.9374907	5.022959	2
GAAGA	4014215	2.5423014	5.1040673	2
CTTCT	4094140	2.5341547	5.501198	1
CCAGG	3894285	2.5253632	5.159556	1
AAGAA	4051685	2.5237646	5.1006503	2
CCTGG	3901180	2.518599	5.86528	1
CTGGA	3766440	2.4030304	8.473183	1
TCCAG	3660145	2.3240643	5.319696	2
CTCCT	3632255	2.28515	7.0443616	1
CTGGG	3458815	2.2437203	8.141816	1
CAGGA	3434115	2.2007775	5.442743	1
CTTCA	3523915	2.1909325	5.599419	1
CTCCA	3425215	2.164509	7.443969	1
CCCAG	3334145	2.151802	6.909884	1
CAGAA	3322735	2.0943239	5.209675	1
CTCTG	3182285	2.0116658	6.361703	1
CTGGC	2895850	1.8695587	5.1391454	1
CTGAA	2941540	1.8458219	5.515361	1
TGGAA	2925810	1.8447582	5.1250687	2
CTCAG	2723540	1.7293528	6.1063285	1
CTTTG	2744020	1.7066168	5.082678	1
CTTGG	2579420	1.6383895	5.35372	1
>>END_MODULE
